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LTBR lymphotoxin beta receptor [ Pteropus giganteus (Indian flying fox) ]

Gene ID: 120611634, updated on 30-Mar-2024

Summary

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Gene symbol
LTBR
Gene description
lymphotoxin beta receptor
See related
EnsemblRapid:ENSPGIG00000013081
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus giganteus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See LTBR in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024345600.1 (3775976..3782382)

NW_024345600.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 1A Neighboring gene sodium channel epithelial 1 subunit alpha Neighboring gene 5S ribosomal RNA Neighboring gene vesicle associated membrane protein 1 Neighboring gene CD27 molecule

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024345600 Unplaced Scaffold Reference Ma_sr-lr_union100

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hematopoietic or lymphoid organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ma_sr-lr_union100

Genomic

  1. NW_024345600.1 Reference Ma_sr-lr_union100

    Range
    3775976..3782382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039874124.1 → XP_039730058.1  tumor necrosis factor receptor superfamily member 3 isoform X1

    Conserved Domains (3) summary
    cd00185
    Location:178 → 218
    TNFRSF; CRD2 [structural motif]
    cd10578
    Location:11 → 176
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:148 → 219
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  2. XM_039874125.1 → XP_039730059.1  tumor necrosis factor receptor superfamily member 3 isoform X2

    Conserved Domains (3) summary
    cd00185
    Location:142 → 175
    TNFRSF; CRD1 [structural motif]
    cd10578
    Location:11 → 176
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:142 → 218
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  3. XM_039874126.1 → XP_039730060.1  tumor necrosis factor receptor superfamily member 3 isoform X3

    Conserved Domains (3) summary
    cd00185
    Location:142 → 167
    TNFRSF; CRD1 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:142 → 210
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)

  4. XM_039874127.1 → XP_039730061.1  tumor necrosis factor receptor superfamily member 3 isoform X4

    Related
    ENSPGIP00000010915.1, ENSPGIT00000016953.1
    Conserved Domains (3) summary
    cd00185
    Location:142 → 167
    TNFRSF; CRD1 [structural motif]
    cd10578
    Location:11 → 168
    TNFRSF3; Tumor necrosis factor receptor superfamily member 3 (TNFRSF3), also known as lymphotoxin beta receptor (LTBR)
    cl22855
    Location:142 → 210
    TNFRSF; Tumor necrosis factor receptor superfamily (TNFRSF)
Nucleotide Protein
Heading Accession and Version

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