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SGCD sarcoglycan delta [ Pteropus giganteus (Indian flying fox) ]

Gene ID: 120581616, updated on 30-Mar-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSPGIG00000015661
Gene type
protein coding
RefSeq status
MODEL
Organism
Pteropus giganteus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Pteropodinae; Pteropus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current Ma_sr-lr_union100 (GCF_902729225.1) Unplaced Scaffold NW_024349802.1 (21295981..22619020)

NW_024349802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120581623 Neighboring gene 5S ribosomal RNA Neighboring gene gem nuclear organelle associated protein 5 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene 5S ribosomal RNA Neighboring gene 40S ribosomal protein S20-like Neighboring gene uncharacterized LOC120581625 Neighboring gene 5S ribosomal RNA Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like Neighboring gene uncharacterized LOC120581624 Neighboring gene uncharacterized LOC120581626 Neighboring gene protein alan shepard-like Neighboring gene 60S ribosomal protein L7-like Neighboring gene poly(rC)-binding protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024349802 Unplaced Scaffold Reference Ma_sr-lr_union100

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pteropus giganteus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ma_sr-lr_union100

Genomic

  1. NW_024349802.1 Reference Ma_sr-lr_union100

    Range
    21295981..22619020
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039836682.1 → XP_039692616.1  delta-sarcoglycan isoform X1

  2. XM_039836683.1 → XP_039692617.1  delta-sarcoglycan isoform X1

  3. XM_039836688.1 → XP_039692622.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_039836681.1 → XP_039692615.1  delta-sarcoglycan isoform X1

  5. XM_039836679.1 → XP_039692613.1  delta-sarcoglycan isoform X1

  6. XM_039836678.1 → XP_039692612.1  delta-sarcoglycan isoform X1

  7. XM_039836686.1 → XP_039692620.1  delta-sarcoglycan isoform X1

  8. XM_039836684.1 → XP_039692618.1  delta-sarcoglycan isoform X1

  9. XM_039836685.1 → XP_039692619.1  delta-sarcoglycan isoform X1

  10. XM_039836680.1 → XP_039692614.1  delta-sarcoglycan isoform X1

  11. XM_039836687.1 → XP_039692621.1  delta-sarcoglycan isoform X1

  12. XM_039836689.1 → XP_039692623.1  delta-sarcoglycan isoform X2

    Related
    ENSPGIP00000013365.1, ENSPGIT00000020496.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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