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hic1 hypermethylated in cancer 1 [ Perca fluviatilis (European perch) ]

Gene ID: 120574108, updated on 10-Jul-2024

Summary

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Gene symbol
hic1
Gene description
hypermethylated in cancer 1
Locus tag
PFLUV_G00024230
See related
EnsemblRapid:ENSPFLG00020019608
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca fluviatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
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Genomic context

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See hic1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
100 current GENO_Pfluv_1.0 (GCF_010015445.1) 2 NC_053113.1 (36351096..36364143)

Chromosome 2 - NC_053113.1Genomic Context describing neighboring genes Neighboring gene TAO kinase 1a Neighboring gene TSR1 ribosome maturation factor Neighboring gene uncharacterized LOC120548838 Neighboring gene uncharacterized LOC120574216 Neighboring gene diphthamide biosynthesis 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053113.1 Chromosome 2 Reference GENO_Pfluv_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypermethylated in cancer 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Perca fluviatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GENO_Pfluv_1.0

Genomic

  1. NC_053113.1 Reference GENO_Pfluv_1.0

    Range
    36351096..36364143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039824198.1 → XP_039680132.1  hypermethylated in cancer 1 protein isoform X1

    Conserved Domains (4) summary
    smart00355
    Location:583 → 605
    ZnF_C2H2; zinc finger
    COG5048
    Location:609 → 657
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:585 → 605
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:38 → 160
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  2. XM_039824226.1 → XP_039680160.1  hypermethylated in cancer 1 protein isoform X4

    Related
    ENSPFLP00020047812.1, ENSPFLT00020054351.1
    Conserved Domains (4) summary
    smart00355
    Location:552 → 574
    ZnF_C2H2; zinc finger
    COG5048
    Location:578 → 626
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:554 → 574
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:7 → 129
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  3. XM_039824217.1 → XP_039680151.1  hypermethylated in cancer 1 protein isoform X3

    Related
    ENSPFLP00020047811.1, ENSPFLT00020054350.1
    Conserved Domains (4) summary
    smart00355
    Location:565 → 587
    ZnF_C2H2; zinc finger
    COG5048
    Location:591 → 639
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:567 → 587
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:20 → 142
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)

  4. XM_039824207.1 → XP_039680141.1  hypermethylated in cancer 1 protein isoform X2

    UniProtKB/TrEMBL
    A0A6A5FFH7
    Conserved Domains (5) summary
    sd00017
    Location:577 → 597
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18333
    Location:30 → 152
    BTB_POZ_ZBTB29_HIC1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in hypermethylated in cancer 1 protein (Hic-1)
    pfam00096
    Location:575 → 597
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:617 → 642
    zf-H2C2_2; Zinc-finger double domain
    cd20908
    Location:545 → 594
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
Nucleotide Protein
Heading Accession and Version

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