U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cracr2b calcium release activated channel regulator 2B [ Perca fluviatilis (European perch) ]

Gene ID: 120564514, updated on 10-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
cracr2b
Gene description
calcium release activated channel regulator 2B
See related
EnsemblRapid:ENSPFLG00020029615
Gene type
protein coding
RefSeq status
MODEL
Organism
Perca fluviatilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Percoidei; Percidae; Percinae; Perca
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cracr2b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
19
Annotation release Status Assembly Chr Location
100 current GENO_Pfluv_1.0 (GCF_010015445.1) 8 NC_053119.1 (18484495..18495658, complement)

Chromosome 8 - NC_053119.1Genomic Context describing neighboring genes Neighboring gene chitinase domain containing 1 Neighboring gene glutamine amidotransferase like class 1 domain containing 1 Neighboring gene CD151 molecule Neighboring gene transmembrane protein 138 Neighboring gene transmembrane protein 258

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053119.1 Chromosome 8 Reference GENO_Pfluv_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi vesicle fusion to target membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neurotransmitter receptor transport to postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking involved in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
EF-hand calcium-binding domain-containing protein 4A

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Perca fluviatilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GENO_Pfluv_1.0

Genomic

  1. NC_053119.1 Reference GENO_Pfluv_1.0

    Range
    18484495..18495658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039809557.1 → XP_039665491.1  EF-hand calcium-binding domain-containing protein 4A

    Conserved Domains (3) summary
    cd00154
    Location:466 → 625
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    COG1196
    Location:204 → 387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00051
    Location:64 → 119
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_039809560.1 → XP_039665494.1  EF-hand calcium-binding domain-containing protein 4A

    Conserved Domains (3) summary
    cd00154
    Location:466 → 625
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    COG1196
    Location:204 → 387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00051
    Location:64 → 119
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_039809558.1 → XP_039665492.1  EF-hand calcium-binding domain-containing protein 4A

    Conserved Domains (3) summary
    cd00154
    Location:466 → 625
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    COG1196
    Location:204 → 387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00051
    Location:64 → 119
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. XM_039809561.1 → XP_039665495.1  EF-hand calcium-binding domain-containing protein 4A

    Conserved Domains (3) summary
    cd00154
    Location:466 → 625
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    COG1196
    Location:204 → 387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00051
    Location:64 → 119
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  5. XM_039809559.1 → XP_039665493.1  EF-hand calcium-binding domain-containing protein 4A

    Related
    ENSPFLP00020070635.1, ENSPFLT00020082647.1
    Conserved Domains (3) summary
    cd00154
    Location:466 → 625
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    COG1196
    Location:204 → 387
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00051
    Location:64 → 119
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.