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hcfc1b host cell factor C1b [ Polypterus senegalus (gray bichir) ]

Gene ID: 120542632, updated on 8-May-2024

Summary

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Gene symbol
hcfc1b
Gene description
host cell factor C1b
Locus tag
GTO96_0007289
See related
EnsemblRapid:ENSSTSG00000021927
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Also known as
Hcfc1_0; Hcfc1_1
Orthologs
zebrafish all
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Genomic context

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See hcfc1b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
27
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 13 NC_053166.1 (71924419..72075682)

Chromosome 13 - NC_053166.1Genomic Context describing neighboring genes Neighboring gene interleukin-1 receptor-associated kinase 1 Neighboring gene uncharacterized LOC120542532 Neighboring gene transmembrane protein 187 Neighboring gene uncharacterized LOC120542792 Neighboring gene cyclin-dependent kinase 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053166.1 Chromosome 13 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1b
Names
HCFC1 factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053166.1 Reference ASM1683550v1 Primary Assembly

    Range
    71924419..72075682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039775220.1 → XP_039631154.1  host cell factor 1b

    Related
    ENSSTSP00000053770.1, ENSSTST00000061131.1
    Conserved Domains (4) summary
    PLN02193
    Location:30 → 325
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:368 → 626
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1813 → 1842
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:203 → 256
    Kelch; KELCH repeat [structural motif]

  2. XM_039775221.1 → XP_039631155.1  host cell factor 1b

    Conserved Domains (4) summary
    PLN02193
    Location:30 → 325
    PLN02193; nitrile-specifier protein
    PHA03247
    Location:368 → 626
    PHA03247; large tegument protein UL36; Provisional
    cd00063
    Location:1813 → 1842
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:203 → 256
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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