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gmppb GDP-mannose pyrophosphorylase B [ Polypterus senegalus (gray bichir) ]

Gene ID: 120540244, updated on 8-May-2024

Summary

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Gene symbol
gmppb
Gene description
GDP-mannose pyrophosphorylase B
Locus tag
GTO96_0005111
See related
EnsemblRapid:ENSSTSG00000014184
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Orthologs
human zebrafish all
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Genomic context

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See gmppb in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 12 NC_053165.1 (13441000..13466117, complement)

Chromosome 12 - NC_053165.1Genomic Context describing neighboring genes Neighboring gene kelch-like protein 10 Neighboring gene E3 ubiquitin-protein ligase RNF123 Neighboring gene adhesion molecule with Ig-like domain 3 Neighboring gene ubiquitin-like modifier activating enzyme 3 Neighboring gene uncharacterized LOC120541296

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053165.1 Chromosome 12 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannose-1-phosphate guanylyltransferase (GTP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GDP-mannose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell wall mannoprotein biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannose-1-phosphate guanyltransferase beta
Names
GMPPB guanyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053165.1 Reference ASM1683550v1 Primary Assembly

    Range
    13441000..13466117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039770820.1 → XP_039626754.1  mannose-1-phosphate guanyltransferase beta

    UniProtKB/TrEMBL
    A0A8X7XPB9
    Conserved Domains (2) summary
    cd06425
    Location:1 → 233
    M1P_guanylylT_B_like_N; N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins
    cl00160
    Location:255 → 334
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...

  2. XM_039770818.1 → XP_039626752.1  mannose-1-phosphate guanyltransferase beta

    UniProtKB/TrEMBL
    A0A8X7XPB9
    Related
    ENSSTSP00000031633.1, ENSSTST00000035693.1
    Conserved Domains (2) summary
    cd06425
    Location:1 → 233
    M1P_guanylylT_B_like_N; N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins
    cl00160
    Location:255 → 334
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...

  3. XM_039770819.1 → XP_039626753.1  mannose-1-phosphate guanyltransferase beta

    UniProtKB/TrEMBL
    A0A8X7XPB9
    Related
    ENSSTSP00000031597.1, ENSSTST00000035657.1
    Conserved Domains (2) summary
    cd06425
    Location:1 → 233
    M1P_guanylylT_B_like_N; N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins
    cl00160
    Location:255 → 334
    LbetaH; Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes ...
Nucleotide Protein
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