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nfia nuclear factor I/A [ Polypterus senegalus (gray bichir) ]

Gene ID: 120537940, updated on 8-May-2024

Summary

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Gene symbol
nfia
Gene description
nuclear factor I/A
Locus tag
GTO96_0003540
See related
EnsemblRapid:ENSSTSG00000022030
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Orthologs
human zebrafish all
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Genomic context

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See nfia in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 10 NC_053163.1 (163251222..163536620)

Chromosome 10 - NC_053163.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120537939 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 1 Neighboring gene Fras1 related extracellular matrix 1b Neighboring gene TM2 domain containing 1 Neighboring gene PATJ crumbs cell polarity complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053163.1 Chromosome 10 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: nuclear factor 1 A-type
Names
NFIA factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053163.1 Reference ASM1683550v1 Primary Assembly

    Range
    163251222..163536620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039767230.1 → XP_039623164.1  LOW QUALITY PROTEIN: nuclear factor 1 A-type

    Related
    ENSSTSP00000051228.1, ENSSTST00000057977.1
    Conserved Domains (2) summary
    pfam10524
    Location:33 → 69
    NfI_DNAbd_pre-N; Nuclear factor I protein pre-N-terminus
    cl00055
    Location:90 → 198
    MH1; N-terminal Mad Homology 1 (MH1) domain
Nucleotide Protein
Heading Accession and Version

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