U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rc3h1a ring finger and CCCH-type domains 1a [ Polypterus senegalus (gray bichir) ]

Gene ID: 120537934, updated on 8-May-2024

Summary

Go to the top of the page Help
Gene symbol
rc3h1a
Gene description
ring finger and CCCH-type domains 1a
Locus tag
GTO96_0003530
See related
EnsemblRapid:ENSSTSG00000020769
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Also known as
Rc3h1
Orthologs
zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See rc3h1a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 10 NC_053163.1 (163020298..163047359, complement)

Chromosome 10 - NC_053163.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 37 Neighboring gene serpin peptidase inhibitor, clade C (antithrombin), member 1 Neighboring gene RAB GTPase activating protein 1-like Neighboring gene G protein-coupled receptor 52 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053163.1 Chromosome 10 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
roquin-1a

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053163.1 Reference ASM1683550v1 Primary Assembly

    Range
    163020298..163047359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039767220.1 → XP_039623154.1  roquin-1a isoform X4

    Conserved Domains (3) summary
    smart00356
    Location:413 → 439
    ZnF_C3H1; zinc finger
    PRK10263
    Location:439 → 627
    PRK10263; DNA translocase FtsK; Provisional
    cd16781
    Location:11 → 54
    mRING-HC-C3HC3D_Roquin1; Modified RING finger, HC subclass (C3HC3D-type), found in Roquin-1

  2. XM_039767218.1 → XP_039623152.1  roquin-1a isoform X2

    Related
    ENSSTSP00000048313.1, ENSSTST00000054245.1
    Conserved Domains (3) summary
    smart00356
    Location:411 → 437
    ZnF_C3H1; zinc finger
    PRK10263
    Location:516 → 716
    PRK10263; DNA translocase FtsK; Provisional
    cd16781
    Location:11 → 54
    mRING-HC-C3HC3D_Roquin1; Modified RING finger, HC subclass (C3HC3D-type), found in Roquin-1

  3. XM_039767219.1 → XP_039623153.1  roquin-1a isoform X3

    Related
    ENSSTSP00000048323.1, ENSSTST00000054255.1
    Conserved Domains (3) summary
    smart00356
    Location:413 → 439
    ZnF_C3H1; zinc finger
    PRK10263
    Location:535 → 958
    PRK10263; DNA translocase FtsK; Provisional
    cd16781
    Location:11 → 54
    mRING-HC-C3HC3D_Roquin1; Modified RING finger, HC subclass (C3HC3D-type), found in Roquin-1

  4. XM_039767217.1 → XP_039623151.1  roquin-1a isoform X1

    Related
    ENSSTSP00000048306.1, ENSSTST00000054238.1
    Conserved Domains (3) summary
    smart00356
    Location:413 → 439
    ZnF_C3H1; zinc finger
    PRK10263
    Location:578 → 958
    PRK10263; DNA translocase FtsK; Provisional
    cd16781
    Location:11 → 54
    mRING-HC-C3HC3D_Roquin1; Modified RING finger, HC subclass (C3HC3D-type), found in Roquin-1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.