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aif1l allograft inflammatory factor 1-like [ Polypterus senegalus (gray bichir) ]

Gene ID: 120536052, updated on 21-Mar-2024

Summary

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Gene symbol
aif1l
Gene description
allograft inflammatory factor 1-like
Locus tag
GTO96_0023277
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Orthologs
human zebrafish all
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Genomic context

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See aif1l in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 9 NC_053162.1 (176247916..176311258, complement)

Chromosome 9 - NC_053162.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 78 member Ab Neighboring gene nucleoporin 214 Neighboring gene uncharacterized LOC120536053 Neighboring gene laminin, gamma 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053162.1 Chromosome 9 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ruffle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ruffle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
allograft inflammatory factor 1-like
Names
AIF1L factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053162.1 Reference ASM1683550v1 Primary Assembly

    Range
    176247916..176311258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039764393.1 → XP_039620327.1  allograft inflammatory factor 1-like

    Conserved Domains (1) summary
    PTZ00183
    Location:57 → 131
    PTZ00183; centrin; Provisional
Nucleotide Protein
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