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tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Polypterus senegalus (gray bichir) ]

Gene ID: 120534342, updated on 8-May-2024

Summary

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Gene symbol
tmtc1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Locus tag
GTO96_0021746
See related
EnsemblRapid:ENSSTSG00000007389
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Orthologs
human zebrafish all
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Genomic context

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See tmtc1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 8 NC_053161.1 (142038073..142608207)

Chromosome 8 - NC_053161.1Genomic Context describing neighboring genes Neighboring gene caprin family member 2 Neighboring gene importin 8 Neighboring gene ovochymase-2-like Neighboring gene KxDL motif containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053161.1 Chromosome 8 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053161.1 Reference ASM1683550v1 Primary Assembly

    Range
    142038073..142608207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039761862.1 → XP_039617796.1  protein O-mannosyl-transferase TMTC1 isoform X1

    Related
    ENSSTSP00000014995.1, ENSSTST00000017592.1
    Conserved Domains (2) summary
    TIGR02917
    Location:464 → 876
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:478 → 506
    TPR; TPR repeat [structural motif]

  2. XM_039761863.1 → XP_039617797.1  protein O-mannosyl-transferase TMTC1 isoform X2

    Conserved Domains (2) summary
    TIGR02917
    Location:457 → 869
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:471 → 499
    TPR; TPR repeat [structural motif]

  3. XM_039761865.1 → XP_039617799.1  protein O-mannosyl-transferase TMTC1 isoform X3

    Conserved Domains (2) summary
    TIGR02917
    Location:361 → 773
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:375 → 403
    TPR; TPR repeat [structural motif]

  4. XM_039761866.1 → XP_039617800.1  protein O-mannosyl-transferase TMTC1 isoform X4

    Related
    ENSSTSP00000014962.1, ENSSTST00000017557.1
    Conserved Domains (2) summary
    TIGR02917
    Location:306 → 718
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:320 → 348
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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