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rfc4 replication factor C (activator 1) 4 [ Polypterus senegalus (gray bichir) ]

Gene ID: 120532792, updated on 8-May-2024

Summary

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Gene symbol
rfc4
Gene description
replication factor C (activator 1) 4
Locus tag
GTO96_0000849
See related
EnsemblRapid:ENSSTSG00000012543
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Orthologs
human zebrafish all
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Genomic context

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See rfc4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 1 NC_053154.1 (140489554..140549392)

Chromosome 1 - NC_053154.1Genomic Context describing neighboring genes Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene uncharacterized LOC120532770 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5a Neighboring gene small nucleolar RNA SNORA81 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene eukaryotic translation initiation factor 4A2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053154.1 Chromosome 1 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA clamp loader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA replication factor C complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
replication factor C subunit 4
Names
RFC4 factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053154.1 Reference ASM1683550v1 Primary Assembly

    Range
    140489554..140549392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039759183.1 → XP_039615117.1  replication factor C subunit 4

    Conserved Domains (1) summary
    PRK00440
    Location:34 → 347
    rfc; replication factor C small subunit; Reviewed

  2. XM_039759175.1 → XP_039615109.1  replication factor C subunit 4

    Related
    ENSSTSP00000027628.1, ENSSTST00000031479.1
    Conserved Domains (1) summary
    PRK00440
    Location:34 → 347
    rfc; replication factor C small subunit; Reviewed
Nucleotide Protein
Heading Accession and Version

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