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galnt17 polypeptide N-acetylgalactosaminyltransferase 17 [ Polypterus senegalus (gray bichir) ]

Gene ID: 120531519, updated on 12-Sep-2024

Summary

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Gene symbol
galnt17
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
Locus tag
GTO96_0019601
See related
EnsemblRapid:ENSSTSG00000021994
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Orthologs
zebrafish all
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Genomic context

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See galnt17 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 6 NC_053159.1 (120386262..120549405, complement)

Chromosome 6 - NC_053159.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120531518 Neighboring gene SBDS ribosome maturation factor Neighboring gene tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) Neighboring gene calneuron 1 Neighboring gene activator of transcription and developmental regulator AUTS2 a Neighboring gene dynein beta chain, ciliary-like Neighboring gene dynein beta chain, ciliary-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053159.1 Chromosome 6 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 17
Names
GLT17 acetylgalactosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053159.1 Reference ASM1683550v1 Primary Assembly

    Range
    120386262..120549405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039756995.1 → XP_039612929.1  polypeptide N-acetylgalactosaminyltransferase 17

    Related
    ENSSTSP00000051046.1, ENSSTST00000057778.1
    Conserved Domains (2) summary
    cd02510
    Location:157 → 456
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:469 → 596
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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