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p3h1 prolyl 3-hydroxylase 1 [ Polypterus senegalus (gray bichir) ]

Gene ID: 120530950, updated on 8-May-2024

Summary

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Gene symbol
p3h1
Gene description
prolyl 3-hydroxylase 1
Locus tag
GTO96_0019010
See related
EnsemblRapid:ENSSTSG00000006559
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Orthologs
human zebrafish all
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Genomic context

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See p3h1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 6 NC_053159.1 (34383106..34439212, complement)

Chromosome 6 - NC_053159.1Genomic Context describing neighboring genes Neighboring gene claudin-16-like Neighboring gene claudin-19-like Neighboring gene chromosome 6 C1orf50 homolog Neighboring gene adaptor related protein complex 5 subunit beta 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053159.1 Chromosome 6 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-proline 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 1
Names
P3H1 hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053159.1 Reference ASM1683550v1 Primary Assembly

    Range
    34383106..34439212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039755793.1 → XP_039611727.1  prolyl 3-hydroxylase 1

    UniProtKB/TrEMBL
    A0A8X7X1W1
    Related
    ENSSTSP00000012843.1, ENSSTST00000015325.1
    Conserved Domains (1) summary
    smart00702
    Location:474 → 672
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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