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sgca sarcoglycan, alpha [ Polypterus senegalus (gray bichir) ]

Gene ID: 120517233, updated on 8-May-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
Locus tag
GTO96_0010850
See related
EnsemblRapid:ENSSTSG00000024631
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Also known as
Sgce_1
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: 17
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 17 NC_053170.1 (7024449..7063972)

Chromosome 17 - NC_053170.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120517791 Neighboring gene protein phosphatase 1, regulatory subunit 9Ba Neighboring gene collagen alpha-1(I) chain-like Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053170.1 Chromosome 17 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan
Names
SGCE protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053170.1 Reference ASM1683550v1 Primary Assembly

    Range
    7024449..7063972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039739412.1 → XP_039595346.1  alpha-sarcoglycan

    Related
    ENSSTSP00000056790.1, ENSSTST00000064810.1
    Conserved Domains (1) summary
    pfam05510
    Location:30 → 351
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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