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LOC120514552 heparan sulfate 2-O-sulfotransferase 1 [ Polypterus senegalus (gray bichir) ]

Gene ID: 120514552, updated on 8-May-2024

Summary

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Gene symbol
LOC120514552
Gene description
heparan sulfate 2-O-sulfotransferase 1
Locus tag
GTO96_0008566
See related
EnsemblRapid:ENSSTSG00000018900
Gene type
protein coding
RefSeq status
MODEL
Organism
Polypterus senegalus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Polypteriformes; Polypteridae; Polypterus
Also known as
Hs2st1
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Genomic context

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See LOC120514552 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM1683550v1 (GCF_016835505.1) 14 NC_053167.1 (76321882..76662422, complement)

Chromosome 14 - NC_053167.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120514275 Neighboring gene LIM domain only 4b Neighboring gene selenoprotein F Neighboring gene endophilin-B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053167.1 Chromosome 14 Reference ASM1683550v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 2-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate 2-O-sulfotransferase 1
Names
HS2ST sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polypterus senegalus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1683550v1 Primary Assembly

Genomic

  1. NC_053167.1 Reference ASM1683550v1 Primary Assembly

    Range
    76321882..76662422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039734985.1 → XP_039590919.1  heparan sulfate 2-O-sulfotransferase 1 isoform X1

    Related
    ENSSTSP00000043411.1, ENSSTST00000048871.1

  2. XM_039734986.1 → XP_039590920.1  heparan sulfate 2-O-sulfotransferase 1 isoform X2

    Related
    ENSSTSP00000043398.1, ENSSTST00000048856.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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