U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TECTA tectorin alpha [ Passer montanus (Eurasian tree sparrow) ]

Gene ID: 120508347, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
TECTA
Gene description
tectorin alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Passer montanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Passeridae; Passer
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TECTA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current ASM1480565v1 (GCF_014805655.1) Unplaced Scaffold NW_024369596.1 (2685434..2718804)

NW_024369596.1Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene tubulin folding cofactor E like Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC120508430

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024369596 Unplaced Scaffold Reference ASM1480565v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-tectorin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Passer montanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1480565v1 Primary Assembly

Genomic

  1. NW_024369596.1 Reference ASM1480565v1 Primary Assembly

    Range
    2685434..2718804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039721833.1 → XP_039577767.1  alpha-tectorin isoform X1

    Conserved Domains (6) summary
    smart00216
    Location:314 → 477
    VWD; von Willebrand factor (vWF) type D domain
    smart00241
    Location:1803 → 2055
    ZP; Zona pellucida (ZP) domain
    smart00539
    Location:98 → 254
    NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
    smart00832
    Location:517 → 592
    C8; This domain contains 8 conserved cysteine residues
    COG3000
    Location:2154 → 2387
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    cl17735
    Location:652 → 706
    VWC; von Willebrand factor type C domain

  2. XM_039721834.1 → XP_039577768.1  alpha-tectorin isoform X1

    Conserved Domains (6) summary
    smart00216
    Location:314 → 477
    VWD; von Willebrand factor (vWF) type D domain
    smart00241
    Location:1803 → 2055
    ZP; Zona pellucida (ZP) domain
    smart00539
    Location:98 → 254
    NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
    smart00832
    Location:517 → 592
    C8; This domain contains 8 conserved cysteine residues
    COG3000
    Location:2154 → 2387
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    cl17735
    Location:652 → 706
    VWC; von Willebrand factor type C domain

  3. XM_039721836.1 → XP_039577770.1  alpha-tectorin isoform X3

    Conserved Domains (5) summary
    smart00216
    Location:314 → 477
    VWD; von Willebrand factor (vWF) type D domain
    smart00241
    Location:1803 → 2055
    ZP; Zona pellucida (ZP) domain
    smart00539
    Location:98 → 254
    NIDO; Extracellular domain of unknown function in nidogen (entactin) and hypothetical proteins
    smart00832
    Location:517 → 592
    C8; This domain contains 8 conserved cysteine residues
    cl17735
    Location:652 → 706
    VWC; von Willebrand factor type C domain

  4. XM_039721835.1 → XP_039577769.1  alpha-tectorin isoform X2

    Conserved Domains (5) summary
    smart00216
    Location:91 → 254
    VWD; von Willebrand factor (vWF) type D domain
    smart00241
    Location:1580 → 1832
    ZP; Zona pellucida (ZP) domain
    smart00832
    Location:294 → 369
    C8; This domain contains 8 conserved cysteine residues
    COG3000
    Location:1931 → 2164
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    cl17735
    Location:429 → 483
    VWC; von Willebrand factor type C domain

  5. XM_039721837.1 → XP_039577771.1  alpha-tectorin isoform X4

    Conserved Domains (4) summary
    smart00216
    Location:92 → 253
    VWD; von Willebrand factor (vWF) type D domain
    smart00241
    Location:415 → 667
    ZP; Zona pellucida (ZP) domain
    smart00832
    Location:296 → 367
    C8; This domain contains 8 conserved cysteine residues
    COG3000
    Location:766 → 999
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  6. XM_039721839.1 → XP_039577773.1  alpha-tectorin isoform X5

    Conserved Domains (3) summary
    smart00241
    Location:145 → 397
    ZP; Zona pellucida (ZP) domain
    smart00832
    Location:26 → 97
    C8; This domain contains 8 conserved cysteine residues
    COG3000
    Location:496 → 729
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  7. XM_039721840.1 → XP_039577774.1  alpha-tectorin isoform X6

    Conserved Domains (2) summary
    smart00241
    Location:1 → 247
    ZP; Zona pellucida (ZP) domain
    COG3000
    Location:346 → 574
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  8. XM_039721841.1 → XP_039577775.1  alpha-tectorin isoform X7

    Conserved Domains (1) summary
    COG3000
    Location:76 → 304
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  9. XM_039721842.1 → XP_039577776.1  alpha-tectorin isoform X8

    Conserved Domains (1) summary
    COG3000
    Location:31 → 259
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.