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kirrel1b kirre like nephrin family adhesion molecule 1b [ Pimephales promelas (fathead minnow) ]

Gene ID: 120495334, updated on 21-Mar-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
Locus tag
F2P79_016949
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121466.1 (1013200..1063892)

NW_024121466.1Genomic Context describing neighboring genes Neighboring gene cell adhesion molecule 3-like Neighboring gene uncharacterized LOC120495186 Neighboring gene uncharacterized LOC120495335 Neighboring gene protein leg1a-like Neighboring gene cytochrome P450 2J3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121466 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1b
Names
kin of IRRE-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121466.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    1013200..1063892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039694837.1 → XP_039550771.1  kin of IRRE-like protein 1b isoform X1

    Conserved Domains (4) summary
    pfam13927
    Location:311 → 376
    Ig_3; Immunoglobulin domain
    cd00096
    Location:126 → 129
    Ig; Ig strand A [structural motif]
    cd05898
    Location:394 → 497
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:126 → 222
    Ig; Immunoglobulin domain

  2. XM_039694840.1 → XP_039550774.1  kin of IRRE-like protein 1b isoform X3

    Conserved Domains (4) summary
    pfam13927
    Location:311 → 376
    Ig_3; Immunoglobulin domain
    cd00096
    Location:126 → 129
    Ig; Ig strand A [structural motif]
    cd05898
    Location:394 → 497
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:126 → 222
    Ig; Immunoglobulin domain

  3. XM_039694838.1 → XP_039550772.1  kin of IRRE-like protein 1b isoform X2

    Conserved Domains (4) summary
    pfam13927
    Location:311 → 376
    Ig_3; Immunoglobulin domain
    cd00096
    Location:126 → 129
    Ig; Ig strand A [structural motif]
    cd05898
    Location:394 → 497
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:126 → 222
    Ig; Immunoglobulin domain

  4. XM_039694841.1 → XP_039550775.1  kin of IRRE-like protein 1b isoform X4

    Conserved Domains (4) summary
    pfam13927
    Location:311 → 376
    Ig_3; Immunoglobulin domain
    cd00096
    Location:126 → 129
    Ig; Ig strand A [structural motif]
    cd05898
    Location:394 → 497
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:126 → 222
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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