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gapdh glyceraldehyde-3-phosphate dehydrogenase [ Pimephales promelas (fathead minnow) ]

Gene ID: 120495043, updated on 21-Mar-2024

Summary

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Gene symbol
gapdh
Gene description
glyceraldehyde-3-phosphate dehydrogenase
Locus tag
F2P79_016824
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
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Genomic context

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See gapdh in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121455.1 (1336124..1345193, complement)

NW_024121455.1Genomic Context describing neighboring genes Neighboring gene intermediate filament family orphan 1b Neighboring gene opsin 9 Neighboring gene natriuretic peptide C-like Neighboring gene small nucleolar RNA SNORA29 Neighboring gene NOP2 nucleolar protein homolog (yeast)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121455 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glyceraldehyde-3-phosphate dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121455.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    1336124..1345193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039694429.1 → XP_039550363.1  glyceraldehyde-3-phosphate dehydrogenase

    Conserved Domains (1) summary
    PLN02272
    Location:2 → 330
    PLN02272; glyceraldehyde-3-phosphate dehydrogenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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