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ddx21 DEAD (Asp-Glu-Ala-Asp) box helicase 21 [ Pimephales promelas (fathead minnow) ]

Gene ID: 120492314, updated on 12-Sep-2024

Summary

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Gene symbol
ddx21
Gene description
DEAD (Asp-Glu-Ala-Asp) box helicase 21
Locus tag
F2P79_015932
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
zebrafish all
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Genomic context

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See ddx21 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121388.1 (2097077..2116356, complement)

NW_024121388.1Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 2-like Neighboring gene interferon regulatory factor 2-like Neighboring gene uncharacterized LOC120492312 Neighboring gene vitrin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121388 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar RNA helicase 2
Names
ATP-dependent RNA helicase DDX50

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121388.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    2097077..2116356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039690542.1 → XP_039546476.1  nucleolar RNA helicase 2 isoform X2

    Conserved Domains (3) summary
    COG0513
    Location:135 → 548
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:570 → 662
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:150 → 351
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50

  2. XM_039690541.1 → XP_039546475.1  nucleolar RNA helicase 2 isoform X1

    Conserved Domains (3) summary
    COG0513
    Location:137 → 550
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd12936
    Location:572 → 664
    GUCT_RHII_Gualpha_beta; RNA-binding GUCT domain found in vertebrate RNA helicase II/Gualpha (RH-II/Gualpha), RNA helicase II/Gubeta (RH-II/Gubeta) and similar proteins
    cd17944
    Location:152 → 353
    DEADc_DDX21_DDX50; DEAD-box helicase domain of DEAD box proteins 21 and 50
Nucleotide Protein
Heading Accession and Version

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