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crkl v-crk avian sarcoma virus CT10 oncogene homolog-like [ Pimephales promelas (fathead minnow) ]

Gene ID: 120490723, updated on 21-Mar-2024

Summary

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Gene symbol
crkl
Gene description
v-crk avian sarcoma virus CT10 oncogene homolog-like
Locus tag
F2P79_015005
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
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Genomic context

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See crkl in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121322.1 (3773428..3778733)

NW_024121322.1Genomic Context describing neighboring genes Neighboring gene sphingomyelin phosphodiesterase 4 Neighboring gene coiled-coil domain containing 74B Neighboring gene mediator complex subunit 15 Neighboring gene phosphoglycerate mutase 2 (muscle) Neighboring gene neurofilament, light polypeptide a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121322 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crk-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121322.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    3773428..3778733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039688106.1 → XP_039544040.1  crk-like protein

    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:127 → 181
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:239 → 295
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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