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mdh1aa malate dehydrogenase 1Aa, NAD (soluble) [ Pimephales promelas (fathead minnow) ]

Gene ID: 120489787, updated on 26-Jun-2024

Summary

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Gene symbol
mdh1aa
Gene description
malate dehydrogenase 1Aa, NAD (soluble)
Locus tag
F2P79_007992
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
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Genomic context

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See mdh1aa in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121100.1 (4806552..4815495, complement)

NW_024121100.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120489769 Neighboring gene steroid-5-alpha-reductase, alpha polypeptide 2a Neighboring gene UDP-glucose pyrophosphorylase 2a Neighboring gene orthodenticle homeobox 2a Neighboring gene GPRIN family member 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121100 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-malate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADH metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxaloacetate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malate dehydrogenase 1Aa, NAD (soluble)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121100.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    4806552..4815495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039686897.1 → XP_039542831.1  malate dehydrogenase 1Aa, NAD (soluble) isoform X1

    Conserved Domains (1) summary
    cd01336
    Location:20 → 345
    MDH_cytoplasmic_cytosolic; Cytoplasmic and cytosolic Malate dehydrogenases

  2. XM_039686902.1 → XP_039542836.1  malate dehydrogenase 1Aa, NAD (soluble) isoform X2

    Conserved Domains (1) summary
    cd01336
    Location:3 → 328
    MDH_cytoplasmic_cytosolic; Cytoplasmic and cytosolic Malate dehydrogenases
Nucleotide Protein
Heading Accession and Version

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