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gh1 growth hormone 1 [ Pimephales promelas (fathead minnow) ]

Gene ID: 120489451, updated on 21-Mar-2024

Summary

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Gene symbol
gh1
Gene description
growth hormone 1
Locus tag
F2P79_002848
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
zebrafish all
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Genomic context

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See gh1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121321.1 (9525565..9528991, complement)

NW_024121321.1Genomic Context describing neighboring genes Neighboring gene interferon phi 3 Neighboring gene RAD52 motif containing 1 Neighboring gene sodium channel, voltage-gated, type IV, alpha, b Neighboring gene uncharacterized LOC120489454 Neighboring gene myosin, light chain 4, alkali; atrial, embryonic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121321 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning and characterization of cDNAs for hormones and/or receptors of growth hormone, insulin-like growth factor-I, thyroid hormone, and corticosteroid and the gender-, tissue-, and developmental-specific expression of their mRNA transcripts in fathead minnow (Pimephales promelas). Filby AL, et al. Gen Comp Endocrinol, 2007 Jan 1. PMID 16970945
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables growth hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables growth hormone receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in animal organ development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in growth hormone receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of growth IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of receptor signaling pathway via JAK-STAT IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of tyrosine phosphorylation of STAT protein IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to nutrient levels IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
somatotropin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121321.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    9525565..9528991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039686277.1 → XP_039542211.1  somatotropin

    UniProtKB/TrEMBL
    Q2TS52
    Conserved Domains (1) summary
    cd10285
    Location:28 → 208
    somatotropin_like; Somatotropin or growth hormone (GH), placental lactogen, and related pituitary gland hormones
Nucleotide Protein
Heading Accession and Version

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