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LOC120489095 titin-cap (telethonin) [ Pimephales promelas (fathead minnow) ]

Gene ID: 120489095, updated on 21-Mar-2024

Summary

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Gene symbol
LOC120489095
Gene description
titin-cap (telethonin)
Locus tag
F2P79_002860
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
zebrafish all
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Genomic context

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See LOC120489095 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121321.1 (10116710..10119214)

NW_024121321.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 171 member A2a Neighboring gene synaptogyrin 1a Neighboring gene uncharacterized LOC120489138 Neighboring gene TAO kinase 2a Neighboring gene CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121321 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-macromolecule adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of muscle IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin Z domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables titin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cardiac muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac muscle tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiac myofibril assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in detection of muscle stretch IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sarcomerogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle myosin thick filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal muscle thin filament assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telethonin
Names
telethonin-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121321.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    10116710..10119214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039685741.1 → XP_039541675.1  telethonin

    Conserved Domains (1) summary
    pfam09470
    Location:29 → 178
    Telethonin; Telethonin protein
Nucleotide Protein
Heading Accession and Version

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