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ctbp2a C-terminal binding protein 2a [ Pimephales promelas (fathead minnow) ]

Gene ID: 120485956, updated on 21-Mar-2024

Summary

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Gene symbol
ctbp2a
Gene description
C-terminal binding protein 2a
Locus tag
F2P79_013439
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
zebrafish all
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Genomic context

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See ctbp2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121255.1 (9254712..9316896, complement)

NW_024121255.1Genomic Context describing neighboring genes Neighboring gene frizzled class receptor 3b Neighboring gene keratinocyte-associated protein 3 Neighboring gene testis expressed 36 Neighboring gene erythroid differentiation regulatory factor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121255 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-terminal-binding protein 2a
Names
C-terminal-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121255.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    9254712..9316896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039681774.1 → XP_039537708.1  C-terminal-binding protein 2a isoform X2

    Conserved Domains (2) summary
    cd05299
    Location:470 → 788
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
    pfam09606
    Location:241 → 434
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

  2. XM_039681780.1 → XP_039537714.1  C-terminal-binding protein 2a isoform X7

    Conserved Domains (1) summary
    cd05299
    Location:46 → 364
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  3. XM_039681783.1 → XP_039537717.1  C-terminal-binding protein 2a isoform X7

    Conserved Domains (1) summary
    cd05299
    Location:46 → 364
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  4. XM_039681786.1 → XP_039537720.1  C-terminal-binding protein 2a isoform X8

    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  5. XM_039681785.1 → XP_039537719.1  C-terminal-binding protein 2a isoform X8

    Conserved Domains (1) summary
    cd05299
    Location:34 → 352
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  6. XM_039681784.1 → XP_039537718.1  C-terminal-binding protein 2a isoform X7

    Conserved Domains (1) summary
    cd05299
    Location:46 → 364
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  7. XM_039681781.1 → XP_039537715.1  C-terminal-binding protein 2a isoform X7

    Conserved Domains (1) summary
    cd05299
    Location:46 → 364
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  8. XM_039681782.1 → XP_039537716.1  C-terminal-binding protein 2a isoform X7

    Conserved Domains (1) summary
    cd05299
    Location:46 → 364
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  9. XM_039681778.1 → XP_039537712.1  C-terminal-binding protein 2a isoform X6

    Conserved Domains (1) summary
    cd05299
    Location:258 → 576
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  10. XM_039681776.1 → XP_039537710.1  C-terminal-binding protein 2a isoform X4

    Conserved Domains (1) summary
    cd05299
    Location:296 → 614
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  11. XM_039681787.1 → XP_039537721.1  C-terminal-binding protein 2a isoform X9

    Conserved Domains (1) summary
    cd05299
    Location:27 → 345
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  12. XM_039681788.1 → XP_039537722.1  C-terminal-binding protein 2a isoform X10

    Conserved Domains (1) summary
    cd05299
    Location:25 → 343
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  13. XM_039681773.1 → XP_039537707.1  C-terminal-binding protein 2a isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:377 → 752
    PHA03247; large tegument protein UL36; Provisional
    cd05299
    Location:754 → 1072
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  14. XM_039681772.1 → XP_039537706.1  C-terminal-binding protein 2a isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:377 → 752
    PHA03247; large tegument protein UL36; Provisional
    cd05299
    Location:754 → 1072
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  15. XM_039681777.1 → XP_039537711.1  C-terminal-binding protein 2a isoform X5

    Conserved Domains (1) summary
    cd05299
    Location:296 → 614
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

  16. XM_039681775.1 → XP_039537709.1  C-terminal-binding protein 2a isoform X3

    Conserved Domains (2) summary
    cd05299
    Location:470 → 788
    CtBP_dh; C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor
    pfam09606
    Location:241 → 434
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
Nucleotide Protein
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