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ddx4 DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 [ Pimephales promelas (fathead minnow) ]

Gene ID: 120483041, updated on 21-Mar-2024

Summary

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Gene symbol
ddx4
Gene description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
Locus tag
F2P79_002253
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
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Genomic context

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See ddx4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121210.1 (28946405..28975358, complement)

NW_024121210.1Genomic Context describing neighboring genes Neighboring gene pleckstrin and Sec7 domain containing 3, like Neighboring gene SH2 domain containing 4A Neighboring gene solute carrier family 38 member 9 Neighboring gene diphosphoinositol pentakisphosphate kinase 2 Neighboring gene macrophage immunometabolism regulator

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121210 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamete generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX4
Names
ATP-dependent RNA helicase DDX4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121210.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    28946405..28975358 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039677894.1 → XP_039533828.1  probable ATP-dependent RNA helicase DDX4

    Conserved Domains (2) summary
    cd18787
    Location:472 → 601
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd18052
    Location:213 → 466
    DEADc_DDX4; DEAD-box helicase domain of DEAD box protein 4
Nucleotide Protein
Heading Accession and Version

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