U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Pimephales promelas (fathead minnow) ]

Gene ID: 120482529, updated on 21-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Locus tag
F2P79_001768
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sgcd in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121210.1 (14268575..14493051)

NW_024121210.1Genomic Context describing neighboring genes Neighboring gene CCR4-NOT transcription complex, subunit 8 Neighboring gene gem (nuclear organelle) associated protein 5 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene rho GTPase-activating protein 7 Neighboring gene adrenoceptor beta 2, surface b

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_024121210 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121210.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    14268575..14493051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039676954.1 → XP_039532888.1  delta-sarcoglycan isoform X2

  2. XM_039676953.1 → XP_039532887.1  delta-sarcoglycan isoform X2

  3. XM_039676952.1 → XP_039532886.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:26 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.