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pnpla4 patatin-like phospholipase domain containing 4 [ Pimephales promelas (fathead minnow) ]

Gene ID: 120468837, updated on 18-Sep-2024

Summary

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Gene symbol
pnpla4
Gene description
patatin-like phospholipase domain containing 4
Locus tag
F2P79_020483
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Orthologs
human zebrafish all
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Genomic context

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See pnpla4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121832.1 (222097..254751, complement)

NW_024121832.1Genomic Context describing neighboring genes Neighboring gene anosmin 1a Neighboring gene uncharacterized LOC120468822 Neighboring gene steroid sulfatase (microsomal), isozyme S Neighboring gene zinc finger MYM-type protein 1-like Neighboring gene ribosomal protein L28

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121832 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4
Names
PNPLA domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121832.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    222097..254751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039657445.1 → XP_039513379.1  patatin-like phospholipase domain-containing protein 4

    Conserved Domains (1) summary
    cd07222
    Location:5 → 250
    Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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