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c1galt1la core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a [ Pimephales promelas (fathead minnow) ]

Gene ID: 120463590, updated on 21-Mar-2024

Summary

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Gene symbol
c1galt1la
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a
Locus tag
F2P79_005527
Gene type
protein coding
RefSeq status
MODEL
Organism
Pimephales promelas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales
Also known as
c1galt1a
Orthologs
zebrafish all
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Genomic context

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See c1galt1la in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current EPA_FHM_2.0 (GCF_016745375.1) Unplaced Scaffold NW_024121654.1 (14162477..14168812, complement)

NW_024121654.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 385A Neighboring gene uncharacterized LOC120463594 Neighboring gene tachykinin precursor 3a Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1a Neighboring gene uncharacterized LOC120463593

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024121654 Unplaced Scaffold Reference EPA_FHM_2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A
Names
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pimephales promelas Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EPA_FHM_2.0 Primary Assembly

Genomic

  1. NW_024121654.1 Reference EPA_FHM_2.0 Primary Assembly

    Range
    14162477..14168812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039652827.1 → XP_039508761.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

    Conserved Domains (1) summary
    cl21608
    Location:164 → 287
    Galactosyl_T; Galactosyltransferase

  2. XM_039652826.1 → XP_039508760.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

    Conserved Domains (1) summary
    cl21608
    Location:164 → 287
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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