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LOC120406425 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120406425, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120406425
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
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Genomic context

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See LOC120406425 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 5 NC_052627.1 (37251793..37554240, complement)

Linkage Group 5 - NC_052627.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120406333 Neighboring gene uncharacterized LOC120406331 Neighboring gene UDP glycosyltransferase 8 Neighboring gene uncharacterized LOC120406332 Neighboring gene uncharacterized LOC120406426 Neighboring gene uncharacterized LOC120405744 Neighboring gene uncharacterized LOC120405745

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052627.1 Chromosome 5 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052627.1 Reference ASM1616193v1 Primary Assembly

    Range
    37251793..37554240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039541294.1 → XP_039397228.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    Conserved Domains (2) summary
    pfam00685
    Location:595 → 876
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_039541295.1 → XP_039397229.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X3

    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_039541292.1 → XP_039397226.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    Conserved Domains (2) summary
    pfam00685
    Location:595 → 876
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_039541291.1 → XP_039397225.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X1

    Conserved Domains (2) summary
    pfam00685
    Location:606 → 887
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:63 → 517
    HSNSD; heparan sulfate-N-deacetylase

  5. XM_039541293.1 → XP_039397227.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X2

    Conserved Domains (2) summary
    pfam00685
    Location:595 → 876
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase

  6. XM_039541296.1 → XP_039397230.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 isoform X4

    Conserved Domains (2) summary
    pfam00685
    Location:215 → 496
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:1 → 126
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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