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LARP7 La ribonucleoprotein 7, transcriptional regulator [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120406372, updated on 21-Mar-2024

Summary

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Gene symbol
LARP7
Gene description
La ribonucleoprotein 7, transcriptional regulator
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See LARP7 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 5 NC_052627.1 (28339439..28374163, complement)

Linkage Group 5 - NC_052627.1Genomic Context describing neighboring genes Neighboring gene sperm tail PG-rich repeat containing 2 Neighboring gene uncharacterized LOC120407121 Neighboring gene ankyrin 2 Neighboring gene uncharacterized LOC120405607 Neighboring gene zinc finger GRF-type containing 1 Neighboring gene neurogenin 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052627.1 Chromosome 5 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
la-related protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052627.1 Reference ASM1616193v1 Primary Assembly

    Range
    28339439..28374163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039541136.1 → XP_039397070.1  la-related protein 7 isoform X1

    Conserved Domains (3) summary
    cd08032
    Location:32 → 113
    LARP_7; La RNA-binding domain of La-related protein 7
    cd12290
    Location:128 → 207
    RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
    cd12542
    Location:469 → 550
    RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

  2. XM_039541139.1 → XP_039397073.1  la-related protein 7 isoform X2

    Conserved Domains (3) summary
    cd08032
    Location:32 → 113
    LARP_7; La RNA-binding domain of La-related protein 7
    cd12290
    Location:128 → 207
    RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
    cd12542
    Location:467 → 548
    RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

  3. XM_039541138.1 → XP_039397072.1  la-related protein 7 isoform X1

    Conserved Domains (3) summary
    cd08032
    Location:32 → 113
    LARP_7; La RNA-binding domain of La-related protein 7
    cd12290
    Location:128 → 207
    RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
    cd12542
    Location:469 → 550
    RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

  4. XM_039541137.1 → XP_039397071.1  la-related protein 7 isoform X1

    Conserved Domains (3) summary
    cd08032
    Location:32 → 113
    LARP_7; La RNA-binding domain of La-related protein 7
    cd12290
    Location:128 → 207
    RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
    cd12542
    Location:469 → 550
    RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins
Nucleotide Protein
Heading Accession and Version

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