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SYNJ2 synaptojanin 2 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120400662, updated on 21-Mar-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
27
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 3 NC_052625.1 (92971781..93061598, complement)

Linkage Group 3 - NC_052625.1Genomic Context describing neighboring genes Neighboring gene TUB like protein 4 Neighboring gene general transcription factor IIH subunit 5 Neighboring gene serine active site containing 1 Neighboring gene uncharacterized LOC120400670 Neighboring gene uncharacterized LOC120400669 Neighboring gene palmitoyltransferase ZDHHC14 Neighboring gene uncharacterized LOC120400668

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052625.1 Chromosome 3 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052625.1 Reference ASM1616193v1 Primary Assembly

    Range
    92971781..93061598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039529548.1 → XP_039385482.1  synaptojanin-2

    Conserved Domains (4) summary
    COG5329
    Location:25 → 487
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1168 → 1446
    Atrophin-1; Atrophin-1 family
    cl00490
    Location:528 → 860
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
    cl17169
    Location:872 → 1007
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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