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TAF1A TATA-box binding protein associated factor, RNA polymerase I subunit A [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120400436, updated on 21-Mar-2024

Summary

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Gene symbol
TAF1A
Gene description
TATA-box binding protein associated factor, RNA polymerase I subunit A
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See TAF1A in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 3 NC_052625.1 (52525830..52551508, complement)

Linkage Group 3 - NC_052625.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120400168 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene HHIP like 2 Neighboring gene MIA SH3 domain ER export factor 3 Neighboring gene axin interactor, dorsalization associated Neighboring gene BRO1 domain and CAAX motif containing

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052625.1 Chromosome 3 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase I IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA box-binding protein-associated factor RNA polymerase I subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052625.1 Reference ASM1616193v1 Primary Assembly

    Range
    52525830..52551508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039528991.1 → XP_039384925.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1

    Conserved Domains (1) summary
    pfam14929
    Location:72 → 432
    TAF1_subA; TAF RNA Polymerase I subunit A

  2. XM_039528990.1 → XP_039384924.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1

    Conserved Domains (1) summary
    pfam14929
    Location:72 → 432
    TAF1_subA; TAF RNA Polymerase I subunit A

  3. XM_039528992.1 → XP_039384926.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1

    Conserved Domains (1) summary
    pfam14929
    Location:72 → 432
    TAF1_subA; TAF RNA Polymerase I subunit A

  4. XM_039528993.1 → XP_039384927.1  TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X2

    Conserved Domains (1) summary
    pfam14929
    Location:72 → 369
    TAF1_subA; TAF RNA Polymerase I subunit A

RNA

  1. XR_005595803.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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