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SYNJ1 synaptojanin 1 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120397787, updated on 21-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
33
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 1 NC_052623.1 (169036841..169158523)

Linkage Group 1 - NC_052623.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cilia- and flagella-associated protein 298-like Neighboring gene uncharacterized LOC120405390 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052623.1 Chromosome 1 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052623.1 Reference ASM1616193v1 Primary Assembly

    Range
    169036841..169158523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039524319.1 → XP_039380253.1  synaptojanin-1 isoform X8

    Conserved Domains (3) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_039524299.1 → XP_039380233.1  synaptojanin-1 isoform X6

    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    pfam03154
    Location:1043 → 1332
    Atrophin-1; Atrophin-1 family
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_039524309.1 → XP_039380243.1  synaptojanin-1 isoform X7

    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1087 → 1267
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_039524327.1 → XP_039380261.1  synaptojanin-1 isoform X9

    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1087 → 1309
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_039524250.1 → XP_039380184.1  synaptojanin-1 isoform X1

    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1060 → 1296
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  6. XM_039524272.1 → XP_039380206.1  synaptojanin-1 isoform X3

    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1087 → 1280
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_039524261.1 → XP_039380195.1  synaptojanin-1 isoform X2

    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1060 → 1283
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  8. XM_039524281.1 → XP_039380215.1  synaptojanin-1 isoform X4

    Conserved Domains (4) summary
    cd09098
    Location:567 → 902
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1087 → 1267
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:62 → 522
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:901 → 1042
    RRM_SF; RNA recognition motif (RRM) superfamily

  9. XM_039524290.1 → XP_039380224.1  synaptojanin-1 isoform X5

    Conserved Domains (4) summary
    cd09098
    Location:528 → 863
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    PHA03247
    Location:1021 → 1257
    PHA03247; large tegument protein UL36; Provisional
    COG5329
    Location:23 → 483
    COG5329; Phosphoinositide polyphosphatase (Sac family) [Signal transduction mechanisms]
    cl17169
    Location:862 → 1003
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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