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PDE9A phosphodiesterase 9A [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120396009, updated on 21-Mar-2024

Summary

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Gene symbol
PDE9A
Gene description
phosphodiesterase 9A
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See PDE9A in Genome Data Viewer
Location:
chromosome: 1
Exon count:
26
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 1 NC_052623.1 (160473099..160591033, complement)

Linkage Group 1 - NC_052623.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120396013 Neighboring gene WD repeat domain 4 Neighboring gene uncharacterized LOC120396012 Neighboring gene solute carrier family 37 member 1 Neighboring gene radial spoke head component 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052623.1 Chromosome 1 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052623.1 Reference ASM1616193v1 Primary Assembly

    Range
    160473099..160591033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039520886.1 → XP_039376820.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Conserved Domains (1) summary
    pfam00233
    Location:251 → 479
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  2. XM_039520885.1 → XP_039376819.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

    Conserved Domains (1) summary
    pfam00233
    Location:251 → 479
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  3. XM_039520890.1 → XP_039376824.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Conserved Domains (1) summary
    pfam00233
    Location:129 → 357
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  4. XM_039520889.1 → XP_039376823.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Conserved Domains (1) summary
    pfam00233
    Location:129 → 357
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  5. XM_039520888.1 → XP_039376822.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Conserved Domains (1) summary
    pfam00233
    Location:129 → 357
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  6. XM_039520892.1 → XP_039376826.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X4

    Conserved Domains (1) summary
    pfam00233
    Location:104 → 332
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase

  7. XM_039520887.1 → XP_039376821.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

    Conserved Domains (1) summary
    pfam00233
    Location:136 → 364
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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