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SMPD4 sphingomyelin phosphodiesterase 4 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120386105, updated on 21-Mar-2024

Summary

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Gene symbol
SMPD4
Gene description
sphingomyelin phosphodiesterase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SMPD4 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
20
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 18 NC_052640.1 (20003506..20032084, complement)

Linkage Group 18 - NC_052640.1Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 15 Neighboring gene coiled-coil domain-containing protein 74B-like Neighboring gene gamma-glutamyltransferase 5 Neighboring gene gamma-glutamyltransferase 1 Neighboring gene uncharacterized LOC120386247 Neighboring gene leucine rich repeat containing 75B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052640.1 Chromosome 18 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052640.1 Reference ASM1616193v1 Primary Assembly

    Range
    20003506..20032084 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039504950.1 → XP_039360884.1  sphingomyelin phosphodiesterase 4 isoform X1

    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  2. XM_039504949.1 → XP_039360883.1  sphingomyelin phosphodiesterase 4 isoform X1

    Conserved Domains (1) summary
    pfam14724
    Location:8 → 772
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase

  3. XM_039504951.1 → XP_039360885.1  sphingomyelin phosphodiesterase 4 isoform X2

    Conserved Domains (1) summary
    pfam14724
    Location:8 → 742
    mit_SMPDase; Mitochondrial-associated sphingomyelin phosphodiesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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