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SLC6A2 solute carrier family 6 member 2 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120384506, updated on 21-Mar-2024

Summary

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Gene symbol
SLC6A2
Gene description
solute carrier family 6 member 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SLC6A2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
16
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 16 NC_052638.1 (13472188..13575926, complement)

Linkage Group 16 - NC_052638.1Genomic Context describing neighboring genes Neighboring gene ferritin heavy chain A-like Neighboring gene uncharacterized LOC120384507 Neighboring gene uncharacterized LOC120384508 Neighboring gene uncharacterized LOC120384509 Neighboring gene lysophosphatidylcholine acyltransferase 2 Neighboring gene calpain small subunit 2 Neighboring gene matrix metallopeptidase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052638.1 Chromosome 16 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dopamine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neurotransmitter:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables norepinephrine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dopamine uptake involved in synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in norepinephrine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent noradrenaline transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052638.1 Reference ASM1616193v1 Primary Assembly

    Range
    13472188..13575926 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039503335.1 → XP_039359269.1  sodium-dependent noradrenaline transporter isoform X1

    Conserved Domains (1) summary
    cd11512
    Location:79 → 638
    SLC6sbd_NET; Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

  2. XM_039503336.1 → XP_039359270.1  sodium-dependent noradrenaline transporter isoform X2

    Conserved Domains (1) summary
    cd11512
    Location:67 → 626
    SLC6sbd_NET; Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain
Nucleotide Protein
Heading Accession and Version

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