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WDR59 WD repeat domain 59 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120384445, updated on 21-Mar-2024

Summary

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Gene symbol
WDR59
Gene description
WD repeat domain 59
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See WDR59 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
28
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 16 NC_052638.1 (1923518..2025686)

Linkage Group 16 - NC_052638.1Genomic Context describing neighboring genes Neighboring gene lactate dehydrogenase D Neighboring gene zinc and ring finger 1 Neighboring gene zinc finger protein 581-like Neighboring gene fatty acid 2-hydroxylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052638.1 Chromosome 16 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATOR complex protein WDR59

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052638.1 Reference ASM1616193v1 Primary Assembly

    Range
    1923518..2025686
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039503154.1 → XP_039359088.1  GATOR complex protein WDR59 isoform X1

    Conserved Domains (4) summary
    COG2319
    Location:34 → 328
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:62 → 103
    7WD40; WD40 repeat [structural motif]
    cd16692
    Location:921 → 967
    mRING-H2-C3H3C2_WDR59; Modified RING finger, H2 subclass (C3H3C2-type), found in WD repeat-containing protein 59 (WDR59) and similar proteins
    cl02687
    Location:394 → 493
    RWD; RWD domain

  2. XM_039503157.1 → XP_039359091.1  GATOR complex protein WDR59 isoform X4

    Conserved Domains (3) summary
    COG2319
    Location:34 → 328
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:62 → 103
    7WD40; WD40 repeat [structural motif]
    cl02687
    Location:394 → 493
    RWD; RWD domain

  3. XM_039503159.1 → XP_039359093.1  GATOR complex protein WDR59 isoform X6

    Conserved Domains (4) summary
    COG2319
    Location:34 → 259
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:108 → 144
    7WD40; WD40 repeat [structural motif]
    cd16692
    Location:856 → 902
    mRING-H2-C3H3C2_WDR59; Modified RING finger, H2 subclass (C3H3C2-type), found in WD repeat-containing protein 59 (WDR59) and similar proteins
    cl02687
    Location:329 → 428
    RWD; RWD domain

  4. XM_039503155.1 → XP_039359089.1  GATOR complex protein WDR59 isoform X2

    Conserved Domains (4) summary
    COG2319
    Location:26 → 313
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:47 → 88
    7WD40; WD40 repeat [structural motif]
    cd16692
    Location:906 → 952
    mRING-H2-C3H3C2_WDR59; Modified RING finger, H2 subclass (C3H3C2-type), found in WD repeat-containing protein 59 (WDR59) and similar proteins
    cl02687
    Location:379 → 478
    RWD; RWD domain

  5. XM_039503158.1 → XP_039359092.1  GATOR complex protein WDR59 isoform X5

    Conserved Domains (4) summary
    sd00039
    Location:47 → 84
    7WD40; WD40 repeat [structural motif]
    cd16692
    Location:859 → 905
    mRING-H2-C3H3C2_WDR59; Modified RING finger, H2 subclass (C3H3C2-type), found in WD repeat-containing protein 59 (WDR59) and similar proteins
    cl02687
    Location:332 → 431
    RWD; RWD domain
    cl29593
    Location:39 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_039503156.1 → XP_039359090.1  GATOR complex protein WDR59 isoform X3

    Conserved Domains (4) summary
    COG2319
    Location:5 → 296
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:30 → 71
    7WD40; WD40 repeat [structural motif]
    cd16692
    Location:889 → 935
    mRING-H2-C3H3C2_WDR59; Modified RING finger, H2 subclass (C3H3C2-type), found in WD repeat-containing protein 59 (WDR59) and similar proteins
    cl02687
    Location:362 → 461
    RWD; RWD domain

RNA

  1. XR_005588890.1 RNA Sequence

  2. XR_005588891.1 RNA Sequence

Nucleotide Protein
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