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NIP7 nucleolar pre-rRNA processing protein NIP7 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120384188, updated on 21-Mar-2024

Summary

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Gene symbol
NIP7
Gene description
nucleolar pre-rRNA processing protein NIP7
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See NIP7 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
5
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 16 NC_052638.1 (41740595..41744181)

Linkage Group 16 - NC_052638.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting 4 homolog A Neighboring gene component of oligomeric golgi complex 8 Neighboring gene transmembrane p24 trafficking protein 6 Neighboring gene telomeric repeat binding factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052638.1 Chromosome 16 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosome subunit biogenesis protein NIP7 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052638.1 Reference ASM1616193v1 Primary Assembly

    Range
    41740595..41744181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039502549.1 → XP_039358483.1  60S ribosome subunit biogenesis protein NIP7 homolog

    Conserved Domains (2) summary
    cd21146
    Location:2 → 88
    Nip7_N_euk; N-terminal domain of eukaryotic 60S ribosome subunit biogenesis protein Nip7 and similar proteins
    cd21151
    Location:95 → 172
    PUA_Nip7-like; PUA RNA binding domain of ribosome assembly factor Nip7 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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