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TBC1D16 TBC1 domain family member 16 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120383745, updated on 21-Mar-2024

Summary

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Gene symbol
TBC1D16
Gene description
TBC1 domain family member 16
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See TBC1D16 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 15 NC_052637.1 (43214142..43256857)

Linkage Group 15 - NC_052637.1Genomic Context describing neighboring genes Neighboring gene alpha glucosidase Neighboring gene coiled-coil domain 40 molecular ruler complex subunit Neighboring gene uncharacterized LOC120382979 Neighboring gene chromobox 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052637.1 Chromosome 15 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TBC1 domain family member 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052637.1 Reference ASM1616193v1 Primary Assembly

    Range
    43214142..43256857
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039501957.1 → XP_039357891.1  TBC1 domain family member 16 isoform X1

    Conserved Domains (1) summary
    smart00164
    Location:446 → 674
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  2. XM_039501964.1 → XP_039357898.1  TBC1 domain family member 16 isoform X2

    Conserved Domains (2) summary
    smart00164
    Location:445 → 673
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    COG5210
    Location:213 → 671
    COG5210; GTPase-activating protein [General function prediction only]

  3. XM_039501962.1 → XP_039357896.1  TBC1 domain family member 16 isoform X1

    Conserved Domains (1) summary
    smart00164
    Location:446 → 674
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  4. XM_039501958.1 → XP_039357892.1  TBC1 domain family member 16 isoform X1

    Conserved Domains (1) summary
    smart00164
    Location:446 → 674
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  5. XM_039501959.1 → XP_039357893.1  TBC1 domain family member 16 isoform X1

    Conserved Domains (1) summary
    smart00164
    Location:446 → 674
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  6. XM_039501961.1 → XP_039357895.1  TBC1 domain family member 16 isoform X1

    Conserved Domains (1) summary
    smart00164
    Location:446 → 674
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  7. XM_039501965.1 → XP_039357899.1  TBC1 domain family member 16 isoform X3

    Conserved Domains (1) summary
    smart00164
    Location:381 → 609
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

  8. XM_039501963.1 → XP_039357897.1  TBC1 domain family member 16 isoform X1

    Conserved Domains (1) summary
    smart00164
    Location:446 → 674
    TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
Nucleotide Protein
Heading Accession and Version

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