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SPHK1 sphingosine kinase 1 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120382966, updated on 21-Mar-2024

Summary

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Gene symbol
SPHK1
Gene description
sphingosine kinase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SPHK1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
8
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 15 NC_052637.1 (29286282..29353868, complement)

Linkage Group 15 - NC_052637.1Genomic Context describing neighboring genes Neighboring gene rhomboid 5 homolog 2 Neighboring gene aralkylamine N-acetyltransferase Neighboring gene ubiquitin conjugating enzyme E2 O Neighboring gene phosphoribosyl pyrophosphate synthetase associated protein 1 Neighboring gene glutamine rich 2 Neighboring gene UBA like domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052637.1 Chromosome 15 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052637.1 Reference ASM1616193v1 Primary Assembly

    Range
    29286282..29353868 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039500466.1 → XP_039356400.1  sphingosine kinase 1 isoform X1

    Conserved Domains (1) summary
    PLN02958
    Location:180 → 543
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  2. XM_039500469.1 → XP_039356403.1  sphingosine kinase 1 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:157 → 520
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  3. XM_039500468.1 → XP_039356402.1  sphingosine kinase 1 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:157 → 520
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase

  4. XM_039500467.1 → XP_039356401.1  sphingosine kinase 1 isoform X2

    Conserved Domains (1) summary
    PLN02958
    Location:157 → 520
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
Nucleotide Protein
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