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SC5D sterol-C5-desaturase [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120375850, updated on 21-Mar-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 12
Exon count:
8
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 12 NC_052634.1 (8143637..8160363)

Linkage Group 12 - NC_052634.1Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene uncharacterized LOC120375852 Neighboring gene tubulin-specific chaperone cofactor E-like protein Neighboring gene uncharacterized LOC120375849 Neighboring gene uncharacterized LOC120375853 Neighboring gene uncharacterized LOC120375851 Neighboring gene sortilin related receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052634.1 Chromosome 12 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052634.1 Reference ASM1616193v1 Primary Assembly

    Range
    8143637..8160363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039496839.1 → XP_039352773.1  lathosterol oxidase

    Conserved Domains (1) summary
    COG3000
    Location:20 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  2. XM_039496838.1 → XP_039352772.1  lathosterol oxidase

    Conserved Domains (1) summary
    COG3000
    Location:20 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  3. XM_039496840.1 → XP_039352774.1  lathosterol oxidase

    Conserved Domains (1) summary
    COG3000
    Location:20 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  4. XM_039496841.1 → XP_039352775.1  lathosterol oxidase

    Conserved Domains (1) summary
    COG3000
    Location:20 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]

  5. XM_039496842.1 → XP_039352776.1  lathosterol oxidase

    Conserved Domains (1) summary
    COG3000
    Location:20 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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