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IDH1 isocitrate dehydrogenase (NADP(+)) 1 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120374292, updated on 21-Mar-2024

Summary

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Gene symbol
IDH1
Gene description
isocitrate dehydrogenase (NADP(+)) 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See IDH1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
10
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 11 NC_052633.1 (15994429..16021278)

Linkage Group 11 - NC_052633.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120375136 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene phosphoinositide kinase, FYVE-type zinc finger containing Neighboring gene uncharacterized LOC120374269 Neighboring gene chromosome 11 C2orf80 homolog Neighboring gene gamma-crystallin C-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052633.1 Chromosome 11 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP] cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052633.1 Reference ASM1616193v1 Primary Assembly

    Range
    15994429..16021278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039493711.1 → XP_039349645.1  isocitrate dehydrogenase [NADP] cytoplasmic

    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 409
    PTZ00435; isocitrate dehydrogenase; Provisional

  2. XM_039493710.1 → XP_039349644.1  isocitrate dehydrogenase [NADP] cytoplasmic

    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 409
    PTZ00435; isocitrate dehydrogenase; Provisional

  3. XM_039493709.1 → XP_039349643.1  isocitrate dehydrogenase [NADP] cytoplasmic

    Conserved Domains (1) summary
    PTZ00435
    Location:1 → 409
    PTZ00435; isocitrate dehydrogenase; Provisional
Nucleotide Protein
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Gene LinkOut

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