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PKD1 polycystin 1, transient receptor potential channel interacting [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120373047, updated on 21-Mar-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See PKD1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
46
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 10 NC_052632.1 (81728439..81867514, complement)

Linkage Group 10 - NC_052632.1Genomic Context describing neighboring genes Neighboring gene NHERF family PDZ scaffold protein 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene TSC complex subunit 2 Neighboring gene RAB26, member RAS oncogene family Neighboring gene uncharacterized LOC120373714 Neighboring gene small nucleolar RNA SNORD60

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052632.1 Chromosome 10 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052632.1 Reference ASM1616193v1 Primary Assembly

    Range
    81728439..81867514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039490882.1 → XP_039346816.1  polycystin-1 isoform X2

    Conserved Domains (7) summary
    TIGR00864
    Location:115 → 2752
    PCC; polycystin cation channel protein
    cd01752
    Location:3132 → 3251
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    sd00031
    Location:90 → 110
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:68 → 86
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08016
    Location:3735 → 4152
    PKD_channel; Polycystin cation channel
    pfam12799
    Location:90 → 126
    LRR_4; Leucine Rich repeats (2 copies)
    cl02559
    Location:3025 → 3074
    GPS; GPCR proteolysis site, GPS, motif

  2. XM_039490883.1 → XP_039346817.1  polycystin-1 isoform X3

    Conserved Domains (7) summary
    TIGR00864
    Location:115 → 2753
    PCC; polycystin cation channel protein
    cd01752
    Location:3133 → 3252
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    sd00031
    Location:90 → 110
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:68 → 86
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08016
    Location:3736 → 4152
    PKD_channel; Polycystin cation channel
    pfam12799
    Location:90 → 126
    LRR_4; Leucine Rich repeats (2 copies)
    cl02559
    Location:3026 → 3075
    GPS; GPCR proteolysis site, GPS, motif

  3. XM_039490880.1 → XP_039346814.1  polycystin-1 isoform X1

    Conserved Domains (7) summary
    TIGR00864
    Location:115 → 2753
    PCC; polycystin cation channel protein
    cd01752
    Location:3133 → 3252
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    sd00031
    Location:90 → 110
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:68 → 86
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08016
    Location:3736 → 4153
    PKD_channel; Polycystin cation channel
    pfam12799
    Location:90 → 126
    LRR_4; Leucine Rich repeats (2 copies)
    cl02559
    Location:3026 → 3075
    GPS; GPCR proteolysis site, GPS, motif
Nucleotide Protein
Heading Accession and Version

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