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SAMD13 sterile alpha motif domain containing 13 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120369631, updated on 21-Mar-2024

Summary

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Gene symbol
SAMD13
Gene description
sterile alpha motif domain containing 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See SAMD13 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 8 NC_052630.1 (81369923..81422961, complement)

Linkage Group 8 - NC_052630.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog subfamily B member 6-like Neighboring gene uricase-like Neighboring gene uncharacterized LOC120370466 Neighboring gene protein kinase cAMP-activated catalytic subunit beta Neighboring gene uncharacterized LOC120370000 Neighboring gene tubulin tyrosine ligase like 7 Neighboring gene uncharacterized LOC120369998

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052630.1 Chromosome 8 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables Hsp70 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chaperone-mediated protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein refolding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sterile alpha motif domain-containing protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052630.1 Reference ASM1616193v1 Primary Assembly

    Range
    81369923..81422961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039483129.1 → XP_039339063.1  sterile alpha motif domain-containing protein 13 isoform X5

    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  2. XM_039483126.1 → XP_039339060.1  sterile alpha motif domain-containing protein 13 isoform X3

    Conserved Domains (1) summary
    cd09583
    Location:46 → 114
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  3. XM_039483127.1 → XP_039339061.1  sterile alpha motif domain-containing protein 13 isoform X4

    Conserved Domains (1) summary
    cd09583
    Location:42 → 110
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  4. XM_039483131.1 → XP_039339065.1  sterile alpha motif domain-containing protein 13 isoform X5

    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  5. XM_039483125.1 → XP_039339059.1  sterile alpha motif domain-containing protein 13 isoform X2

    Conserved Domains (1) summary
    cd09583
    Location:49 → 117
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  6. XM_039483130.1 → XP_039339064.1  sterile alpha motif domain-containing protein 13 isoform X5

    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  7. XM_039483128.1 → XP_039339062.1  sterile alpha motif domain-containing protein 13 isoform X5

    Conserved Domains (1) summary
    cd09583
    Location:28 → 96
    SAM_Atherin-like; SAM domain of Atherin/Atherin-like subfamily

  8. XM_039483124.1 → XP_039339058.1  sterile alpha motif domain-containing protein 13 isoform X1

    Conserved Domains (1) summary
    pfam00226
    Location:3 → 66
    DnaJ; DnaJ domain
Nucleotide Protein
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