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EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 [ Mauremys reevesii (Reeves's turtle) ]

Gene ID: 120368702, updated on 21-Mar-2024

Summary

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Gene symbol
EDEM1
Gene description
ER degradation enhancing alpha-mannosidase like protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Mauremys reevesii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Geoemydidae; Geoemydinae; Mauremys
Orthologs
human mouse all
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Genomic context

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See EDEM1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly LG Location
100 current ASM1616193v1 (GCF_016161935.1) 7 NC_052629.1 (110913820..110937959, complement)

Linkage Group 7 - NC_052629.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120368563 Neighboring gene glutamate metabotropic receptor 7 Neighboring gene uncharacterized LOC120368832 Neighboring gene ARF like GTPase 8B Neighboring gene basic helix-loop-helix family member e40

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052629.1 Chromosome 7 Reference ASM1616193v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles. Lu B, et al. PLoS One, 2013. PMID 24278129, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum mannose trimming IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mannose trimming involved in glycoprotein ERAD pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ER degradation-enhancing alpha-mannosidase-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mauremys reevesii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1616193v1 Primary Assembly

Genomic

  1. NC_052629.1 Reference ASM1616193v1 Primary Assembly

    Range
    110913820..110937959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039481087.1 → XP_039337021.1  ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X1

    Conserved Domains (1) summary
    pfam01532
    Location:110 → 555
    Glyco_hydro_47; Glycosyl hydrolase family 47

  2. XM_039481089.1 → XP_039337023.1  ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X2

    Conserved Domains (1) summary
    pfam01532
    Location:1 → 387
    Glyco_hydro_47; Glycosyl hydrolase family 47

  3. XM_039481090.1 → XP_039337024.1  ER degradation-enhancing alpha-mannosidase-like protein 1 isoform X2

    Conserved Domains (1) summary
    pfam01532
    Location:1 → 387
    Glyco_hydro_47; Glycosyl hydrolase family 47
Nucleotide Protein
Heading Accession and Version

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