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LOC120348761 U8 snoRNA-decapping enzyme-like [ Nilaparvata lugens (brown planthopper) ]

Gene ID: 120348761, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120348761
Gene description
U8 snoRNA-decapping enzyme-like
See related
EnsemblRapid:LOC120348761
Gene type
protein coding
RefSeq status
MODEL
Organism
Nilaparvata lugens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Auchenorrhyncha; Fulgoroidea; Delphacidae; Delphacinae; Nilaparvata
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Genomic context

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See LOC120348761 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM1435652v1 (GCF_014356525.1) 5 NC_052508.1 (24240082..24246783)

Chromosome 5 - NC_052508.1Genomic Context describing neighboring genes Neighboring gene DDB1- and CUL4-associated factor 8 Neighboring gene formylglycine-generating enzyme Neighboring gene formylglycine-generating enzyme-like Neighboring gene U8 snoRNA-decapping enzyme Neighboring gene nucleolar GTP-binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052508.1 Chromosome 5 Reference ASM1435652v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphodiesterase decapping endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sno(s)RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U8 snoRNA-decapping enzyme-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nilaparvata lugens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1435652v1 Primary Assembly

Genomic

  1. NC_052508.1 Reference ASM1435652v1 Primary Assembly

    Range
    24240082..24246783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039428004.1 → XP_039283938.1  U8 snoRNA-decapping enzyme-like isoform X2

    Related
    XP_039283938.1, XM_039428004.1
    Conserved Domains (1) summary
    cd02883
    Location:77 → 168
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  2. XM_039428005.1 → XP_039283939.1  U8 snoRNA-decapping enzyme-like isoform X3

    Related
    XP_039283939.1, XM_039428005.1
    Conserved Domains (1) summary
    cd02883
    Location:4 → 83
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  3. XM_039428003.1 → XP_039283937.1  U8 snoRNA-decapping enzyme-like isoform X1

    Related
    XP_039283937.1, XM_039428003.1
    Conserved Domains (1) summary
    cd02883
    Location:72 → 156
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  4. XM_039428006.1 → XP_039283940.1  U8 snoRNA-decapping enzyme-like isoform X3

    Related
    XP_039283940.1, XM_039428006.1
    Conserved Domains (1) summary
    cd02883
    Location:4 → 83
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...
Nucleotide Protein
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