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LOC120348736 host cell factor 1-like [ Nilaparvata lugens (brown planthopper) ]

Gene ID: 120348736, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120348736
Gene description
host cell factor 1-like
See related
EnsemblRapid:LOC120348736
Gene type
protein coding
RefSeq status
MODEL
Organism
Nilaparvata lugens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Auchenorrhyncha; Fulgoroidea; Delphacidae; Delphacinae; Nilaparvata
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Genomic context

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See LOC120348736 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM1435652v1 (GCF_014356525.1) 4 NC_052507.1 (14757308..14760766, complement)

Chromosome 4 - NC_052507.1Genomic Context describing neighboring genes Neighboring gene copine-8 Neighboring gene SAYSVFN motif domain containing 1 Neighboring gene zinc finger protein 525 Neighboring gene enolase-phosphatase E1 Neighboring gene uncharacterized LOC120351004

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052507.1 Chromosome 4 Reference ASM1435652v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nilaparvata lugens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1435652v1 Primary Assembly

Genomic

  1. NC_052507.1 Reference ASM1435652v1 Primary Assembly

    Range
    14757308..14760766 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039426731.1 → XP_039282665.1  host cell factor 1-like

    Related
    XP_039282665.1, XM_039426731.1
    Conserved Domains (3) summary
    PLN02193
    Location:4 → 276
    PLN02193; nitrile-specifier protein
    cd00063
    Location:912 → 1021
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:93 → 151
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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