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LOC120346922 chondroitin sulfate N-acetylgalactosaminyltransferase 2-like [ Styela clava ]

Gene ID: 120346922, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120346922
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Styela clava
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Styelidae; Styela
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Genomic context

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See LOC120346922 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM1312258v2 (GCF_013122585.1) Unplaced Scaffold NW_024102841.1 (1862641..1869269)

NW_024102841.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 18-like Neighboring gene pecanex-like protein 1 Neighboring gene 40S ribosomal protein S14 Neighboring gene small nucleolar RNA SNORA16B/SNORA16A family Neighboring gene activating signal cointegrator 1 complex subunit 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024102841 Unplaced Scaffold Reference ASM1312258v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Styela clava Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1312258v2 Primary Assembly

Genomic

  1. NW_024102841.1 Reference ASM1312258v2 Primary Assembly

    Range
    1862641..1869269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039416714.1 → XP_039272648.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2-like isoform X2

    Conserved Domains (1) summary
    cl11394
    Location:125 → 484
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_039416713.1 → XP_039272647.1  chondroitin sulfate N-acetylgalactosaminyltransferase 2-like isoform X1

    Conserved Domains (1) summary
    cl11394
    Location:153 → 512
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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