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LOC120341227 polypeptide N-acetylgalactosaminyltransferase 6-like [ Styela clava ]

Gene ID: 120341227, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120341227
Gene description
polypeptide N-acetylgalactosaminyltransferase 6-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Styela clava
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Styelidae; Styela
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Genomic context

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See LOC120341227 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM1312258v2 (GCF_013122585.1) Unplaced Scaffold NW_024102837.1 (1495619..1501728)

NW_024102837.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120340884 Neighboring gene uncharacterized LOC120340885 Neighboring gene uncharacterized LOC120340850 Neighboring gene uncharacterized LOC120341648

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024102837 Unplaced Scaffold Reference ASM1312258v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Styela clava Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1312258v2 Primary Assembly

Genomic

  1. NW_024102837.1 Reference ASM1312258v2 Primary Assembly

    Range
    1495619..1501728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039409704.1 → XP_039265638.1  polypeptide N-acetylgalactosaminyltransferase 6-like

    Conserved Domains (2) summary
    cd02510
    Location:280 → 579
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:600 → 687
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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