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LOC120335740 aspartyl/asparaginyl beta-hydroxylase-like [ Styela clava ]

Gene ID: 120335740, updated on 7-Dec-2023

Summary

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Gene symbol
LOC120335740
Gene description
aspartyl/asparaginyl beta-hydroxylase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Styela clava
Lineage
Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Styelidae; Styela
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Genomic context

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See LOC120335740 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ASM1312258v2 (GCF_013122585.1) Unplaced Scaffold NW_024102834.1 (20350027..20392449, complement)

NW_024102834.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120335728 Neighboring gene motile sperm domain-containing protein 2-like Neighboring gene mitochondrial glutamate carrier 1-like Neighboring gene uncharacterized LOC120335795 Neighboring gene uncharacterized LOC120335736 Neighboring gene uncharacterized LOC120335814

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_024102834 Unplaced Scaffold Reference ASM1312258v2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Styela clava Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1312258v2 Primary Assembly

Genomic

  1. NW_024102834.1 Reference ASM1312258v2 Primary Assembly

    Range
    20350027..20392449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039403349.1 → XP_039259283.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X1

    Conserved Domains (4) summary
    PTZ00121
    Location:143 → 336
    PTZ00121; MAEBL; Provisional
    COG0457
    Location:241 → 500
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:362 → 388
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:498 → 654
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_039403350.1 → XP_039259284.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X2

    Conserved Domains (4) summary
    PTZ00121
    Location:140 → 289
    PTZ00121; MAEBL; Provisional
    COG0457
    Location:223 → 482
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:344 → 370
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:480 → 636
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_039403351.1 → XP_039259285.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X3

    Conserved Domains (4) summary
    PTZ00121
    Location:106 → 255
    PTZ00121; MAEBL; Provisional
    COG0457
    Location:189 → 448
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:310 → 336
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:446 → 602
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_039403352.1 → XP_039259286.1  aspartyl/asparaginyl beta-hydroxylase-like isoform X4

    Conserved Domains (4) summary
    PTZ00121
    Location:89 → 233
    PTZ00121; MAEBL; Provisional
    COG0457
    Location:167 → 426
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:288 → 314
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:424 → 580
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
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